English
Office Phone: (+30) 2810 39 1953
Lab Phone: (+30) 2810 39 1347
Fax: G027
Email: azoumi@iesl.forth.gr
Dr. Zoumi Aikaterini

Dr Aikaterini Zoumi obtained her PhD degree in Biomedical Engineering at the University of California, Irvine, USA. Her doctorate and post-doctorate research was conducted at the Beckman Laser Institute, University of California, Irvine, and involved the utilization of multiphoton microscopy and spectroscopy of micro-structural tissue and cellular components in order to address specific biological questions. She received her M.S. degree from the Department of Production Engineering and Management of the Technical University of Crete, Greece. During her M.S. research, she studied the formation of chlorination by-products during disinfection of treated wastewater. She received her B.S. degree from the Department of Mineral Resources Engineering of the Technical University of Crete, Greece. Her undergraduate thesis focused on trace element and radioactivity analysis of aerosol particles, produced from lignitic power stations in Greece. She is currently a post-doctoral researcher at IESL/FORTH focusing on the development of specialized optical spectroscopic analysis methods for the identification and origin and quality control of agricultural products.

Education

  • 2003, Ph.D. in Biomedical Engineering, University of California, Irvine, USA
  • 1998, M.Sc. in Production Engineering and Management, Technical University of Crete, Greece
  • 1996, B.Sc. in Mineral Resources Engineering, Technical University of Crete, Greece

Interests

  • Biophotonics
  • Imaging
  • Microscopy
  • Spectroscopy

Awards/Prizes/Distinctions

  • 1993–1998: Outstanding Student Scholarship from National Scholarship Foundation, Greece.
  • 1998–1999: Regents’ Fellowship, University of California, Irvine, USA.
  • 1999 – 2000: Whitaker Foundation Biomedical Engineering Graduate Fellowship, University of California, Irvine School of Engineering, USA.
  • 2001 - present: member of the Optical Society of America
  • 2001 - present: member of the SPIE-International Society for Optical Engineering
  • 2001 - present: member of Women in Optics
  • 2004 - 2005: Honored member of Manchester Who’s Who
Imaging cells and extracellular matrix in vivo by using second-harmonic generation and two-photon excited fluorescence
Aikaterini Zoumi, Alvin Yeh, and Bruce J. Tromberg
PNAS, Volume: 99 , Issue:17, Page:11014-11019, Year:2002, DOI:doi.org/10.1073/pnas.172368799
Imaging coronary artery microstructure using second-harmonic and two-photon fluorescence microscopy
Aikaterini Zoumi, Xiao Lu, Ghassan S Kassab, Bruce J Tromberg
Biophysical Journal, Volume:87, Issue:4, Page:2778-2786, Year:2004, DOI:doi.org/10.1529/biophysj.104.042887
Spatial Distribution and Function of Sterol Regulatory Element-Binding Protein 1a and 2 Homo- and Heterodimers by In Vivo Two-Photon Imaging and Spectroscopy Fluorescence Resonance Energy Transfer
Aikaterini Zoumi, Shrimati Datta, Lih-Huei L. Liaw, Cristen J. Wu, Gopi Manthripragada, Timothy F. Osborne, Vickie J. LaMorte
Molecular and cellular biology, Volume:25, Issue:8, Page:2946-2956, Year:2005, DOI:doi.org/10.1128/MCB.25.8.2946-2956.2005
Combined two-photon excited fluorescence and second-harmonic generation backscattering microscopy of turbid tissues
Aikaterini Zoumi, Alvin T Yeh, Bruce J Tromberg
Proceedings of Multiphoton Microscopy in the Biomedical Sciences II, Volume:4620, Page:175-182, Year:2002, DOI:doi.org/10.1117/12.470701
Selective corneal imaging using combined second-harmonic generation and two-photon excited fluorescence
Alvin T Yeh, Nader Nassif, Aikaterini Zoumi, Bruce J Tromberg
Optics Letters, Volume:27, Issue:23, Page:2082-2084, Year:2002, DOI:doi.org/10.1364/OL.27.002082
Nonlinear optical microscopy of articular cartilage
Alvin T Yeh, Marie J Hammer-Wilson, David C Van Sickle, Hilary P Benton, Aikaterini Zoumi, Bruce J Tromberg, George M Peavy
Osteoarthritis and cartilage, Volume:13, Issue:4, Page:345-352, Year:2005, DOI:doi.org/10.1016/j.joca.2004.12.007
SPECIAL SECTION ON MULTIPHOTON MICROSCOPY (18)
Ammasi Periasamy, Alberto Diaspro, Mary Dickinson, Eva Simbuerger, Bernhard Zimmermann, Christopher Waters, Scott Fraser, Horst Wallrabe, Michael Stanley, Margarida Barroso, James Mills, James Stone, David Rubin, David Melon, David Okonkwo, Gregory Helm, Vickie LaMorte, Aikaterini Zoumi, Bruce Tromberg
Journal of biomedical optics, Volume:8, Issue:3, Page:1, Year:2003, DOI:doi.org/10.1117/1.1577116
Spectroscopic approach for monitoring two-photon excited fluorescence resonance energy transfer from homodimers at the subcellular level
Vickie J LaMorte, Aikaterini Zoumi, Bruce J Tromberg
Journal of biomedical optics, Volume:8, Issue:3, Page:357-362, Year:2003, DOI:doi.org/10.1117/1.1584052
One-photon versus two-photon excited fluorescence resonance energy transfer of GFP fusion proteins
Vickie J LaMorte, Tatiana B Krasieva, Aikaterini Zoumi, Barry M Forman, Corinne Solier
Proceedings of Multiphoton microscopy in the biomedical sciences II, Volume:4620, Page:73-79, Year:2002, DOI:doi.org/10.1117/12.470678
Verifying the Geographical Origin and Authenticity of Greek Olive Oils by Means of Optical Spectroscopy and Multivariate Analysis
Renate Kontzedaki, Emmanouil Orfanakis, Georgia Sofra-Karanti, Katerina Stamataki, Aggelos Philippidis, Aikaterini Zoumi, Michalis Velegrakis
Molecules, Volume:25, Issue:4180, Page:doi:10.3390/molecules25184180, Year:2020, DOI:doi:10.3390/molecules25184180
Optical spectroscopy methods combined with multivariate statistical analysis for the classification of Cretan thyme, multi-floral and honeydew honey
Emmanouil Orfanakis,Michail Markoulidakis,Aggelos Philippidis, Aikaterini Zoumi,Michalis Velegrakis
JSFA, Volume:published online, Page:DOI 10.1002/jsfa.11182, Year:2021, DOI:https://doi.org/10.1002/jsfa.11182
Application of Ultraviolet-Visible Absorption Spectroscopy with Machine Learning Techniques for the Classification of Cretan Wines
Aggelos Philippidis, Emmanouil Poulakis, Renate Kontzedaki, Emmanouil Orfanakis, Aikaterini Symianaki, Aikaterini Zoumi, Michalis Velegrakis
Foods, Volume:10, Issue:9, Page:https://dx.doi.org/10.3390/ foods10010009, Year:2021, DOI:https://dx.doi.org/10.3390/ foods10010009
Email: nvasilan@iesl.forth.gr
Office Phone: (+30) 2610-620815
Email: mourka@praxinetwork.gr
Dr. Mourka Areti

Areti is author and co-author of > 15 peer-reviewed journal and conference papers, matching > 800 citations (h-index is 10). Well versed in EU regulations and procedures, EC funded projects, managing R&D projects, participated in several FP7 projects and WP leader in two H2020 projects. She has been the recipient of several scholarships and awards; in 2019 she has been awarded with a Post-doctoral 'Stavros Niarchos Foundation - FORTH Fellowship' within the project ARCHERS. As a Tech Expert, she currently works as a Technology Transfer Consultant in PRAXI Network/FORTH that is the leading technology transfer and innovation support organization in Greece; where recenty she has been promoted as Head of Unit at the Technology Transfer Office (TTO) at FORTH | PRAXI Network.

Education

  • 2013, Ph.D. in Laser Physics, Dept. of Physics and Astronomy, University of St. Andrews, Scotland, UK.
  • 2009, M.Sc. in Microelectronics & Optoelectronics, Dept. of Physics, University of Crete, Greece.
  • 2007, B.Sc. in Physics, Dept. of Physics, University of Crete, Greece.

Career

  • 01/2023 - ..., Head of Unit, Technology Transfer Office (TTO) at Foundation for Research and Technology - Hellas (FORTH) | PRAXI Network
  • 09/2021 - 12/2022, Technology Transfer Consultant, PRAXI network
  • 01/2021 - 12/2021, Postdoctoral Research Fellow, Department of Electrical & Computer Engineering, Hellenic Mediterranean University, (Heraklion, Greece)
  • 07/2018 – 12/2020, Postdoctoral Research Fellow, Institute of Electronic Structure and Laser, Foundation of Research and Technology-Hellas, (Heraklion, Greece)
  • 10/2018 – 12/18, Temporary Postdoctoral Research Associate in Science Program, Texas A&M University at Qatar -TAMUQ (Doha, Qatar)
  • 12/14 – 06/18, Research & Development (R&D) Scientist in Nanoscribe GmbH (Karlsruhe, Germany)
  • 12/13 – 11/14, Postdoctoral Researcher, Marie Curie Fellow & Laser Development Engineer at Amplitude Systèmes (Bordeaux, France)
  • 12/12 – 11/13, Postdoctoral Research Assistant, Dept. of Physics and Astronomy, University of St. Andrews (Scotland, UK)

Interests

  • Novel ultrafast laser micro/nano processing techniques
  • Optoelectronics Engineering, Laser methods for biomolecules patterning and materials processing
  • Light – Matter Interaction, 3D Printing
  • 4D Printing and Soft Robotics, 3D Bioprinting
  • Laser beam shaping / Adaptive Optics
  • Non-linear lithography / Laser-based nanofabrication

Awards/Prizes/Distinctions

  • 2022 - Guest Editor of Special Issue in Sensors: Women’s Special Issue Series - LINK:https://www.mdpi.com/journal/sensors/special_issues/WoS
  • 2022 - Continues as a Vice chair @Marie Curie Alumni Association (MCAA) Greek Chapter
  • 2021 - Dr. Mourka was selected again to serve as an evaluator by the European Commission
  • 2021 - Vice chair @Marie Curie Alumni Association (MCAA) Greek Chapter
  • 2021 - Women in Optics Planner | SPIE | https://spie.org/about-spie/advocacy/women-in-optics/women-in-optics-planner/2021-wio-planner/areti-mourka
  • 2019 - Modular photo-induced non-linear additive manufacturing series - ‘MINOAS’ project | SNF-ARCHERS-IESL | https://archers.iesl.forth.gr/areti-mourka/
  • 2019 - Best poster presentation | 12th FORTH Retreat (14th – 16th October 2019)
  • 2019 - A travel grant was awarded from Marie Curie Alumni Association - MCAA for Areti's participation in the Forces and Forms of Doctoral Education 2019 conference in Hannover, Germany (5th – 6th September 2019)
  • 2019 - Dr. Mourka was selected to serve as an evaluator by the European Commission
  • 2018 - Visiting lecturer at the Department of Electronic Engineering of the Technological Educational Institute of Crete, in the context of the national program ‘Acquisition of Academic teaching experience in Young Scientists 2018-2019’
  • 2013 - SUPA (Scottish Universities Physics Alliance) Graduate School Management Committee has supported Areti as an Early Career Researcher
  • 2013 - Selected as a chairperson of the session on Laser Beam shaping at the Photonics 4 Life Network, 2nd Fast-Dot Summer School ‘Photonics meets Biology’, Heraklion, Greece (30th September – 3rd October 2013)
  • 2013 - Best student poster presentation award at the Photonics 4 Life Network, 2nd Fast-Dot Summer School ‘Photonics meets Biology’, Heraklion, Greece, 30th September – 3rd October 2013 (100€ prize funded by Nature Photonics journal)
  • 2011 - Photonics 4 Life Network, 1st Fast-Dot Summer School ‘Photonics meets Biology’, Heraklion, Greece, 15th - 18th September 2011. A scholarship was awarded from the organization committee to cover the cost of Areti's participation.
  • 2009-2013 PhD funding from UK EPSRC (Engineering and Physical Sciences Research Council)
  • 2007-2009 Microelectronics – Optoelectronics M. Sc. Graduate Program, EPEAEK, National Scholarship Foundation
  • 2006-2007 Student Award, State Scholarships Foundation (IKY)

Other

Projects:

  1. CARIOQA-PMP project - HORIZON-CL4-2021-SPACE | 2022 - 2026
  2. AccelerACTION project - HORIZON-EIE-2021-SCALEUP | 2022 - 2025
  3. smartHEALTH project - European Digital Innovation Haubs (DIGITAL-2021-EDIH-INITIAL-01) | 2022 - 2026
  4. Alternative smart ocular implants with controlled ophthalmic pharmacokinetics 2018-2021 | https://eeeeof.iesl.forth.gr
  5. Functional surface treatments using ultra-short pulse laser system - FemtoSurf | H2020-ICT | https://cordis.europa.eu/project/id/825512
  6. High-Power Ultrafast LaSErs using Tapered Double-Clad Fibre - PULSE | H2020-ICT | https://cordis.europa.eu/project/id/824996
  7. Modular photo-induced non-linear additive manufacturing series - MINOAS | SNF-ARCHERS-IESL 2019
  8. PRINTOPTICS - Federal Ministry of Education and Research - BMBF (Bundesministerium für Bildung und Forschung) 2017
  9. PHOIBOS - Federal Ministry of Education and Research - BMBF (Bundesministerium für Bildung und Forschung) 2015
  10. Two Photon Absorbers for Biomedical Applications - TOPBIO | FP7-PEOPLE-2010-ITN | https://cordis.europa.eu/project/id/264362
Modal Characterization using Principal Component Analysis: application to Bessel, higher-order Gaussian beams and their superposition
A. Mourka, M. Mazilu, E. M. Wright, K. Dholakia
Sci. Rep., Volume:3, Page:1422, Year:2013, DOI:https://doi.org/10.1038/srep01422
Auto- focusing and self-healing of Pearcey beams
J. Ring, J. Lindberg, A. Mourka, M. Mazilu, K. Dholakia, M. R. Dennis
Opt. Express, Volume:20, Page:18955-18966 , Year:2012, DOI:https://doi.org/10.1364/OE.20.018955
Simultaneous determination of the constituent azimuthal and radial mode indices for light fields possessing orbital angular momentum
M. Mazilu, A. Mourka, T. Vettenburg, E. M. Wright, K. Dholakia
Appl. Phys. Lett. , Volume:100, Page:231115, Year:2012, DOI:https://doi.org/10.1063/1.4728111
Visualization of the birth of an optical vortex using diffraction from a triangular aperture
A. Mourka, J. Baumgartl, C. Shanor, K. Dholakia, E. M. Wright
Opt. Express, Volume:19, Page:5760-5771 , Year:2011, DOI:https://doi.org/10.1364/OE.19.005760
Direct three-dimensional patterning of self-assembled peptide fibrils
V. Dinca, E. Kasotakis, J. Catherine, A. Mourka, A. Ranella, A. Ovsianikov, B. N. Chichkov, M. Farsari, A. Mitraki, and C. Fotakis
Nano Lett., Volume:8, Page:538-543 , Year:2008, DOI:DOI: 10.1021/nl072798r
Office Phone: (+30) 2810 391359
Email: mvergis@iesl.forth.gr
Office Phone: (+30) 2810 39 1355
Email: georgina@iesl.forth.gr
Office Phone: (+30) 2810 39 1958
Lab Phone: (+30) 2810 39 1958
Fax: G060
Email: orfanak@iesl.forth.gr

Michalis Orfanakis is a Physicist and currently a PhD student, member of the Laboratory for Biophotonics and Molecular Imaging (LBMI) of IESL. His research focuses on developing spectroscopic and photoacoustic techniques for bio-marker monitoring. The aim of this doctoral research is the development of spectroscopic and photoacoustic techniques for the identification and real time monitoring of bio-markers, using visible and infrared light.  He has a MSc in Microelectronics and Optoelectronics from the Physics Dpt. of the University of Crete with his master thesis in the field of Optical Tweezers. Michalis is also a science teacher in secondary education and he is interested in adapting modern scientific research projects to school level. He is an expert in the field of STEM Education and he is honored with two European Awards. The “European STEM Teacher Award” in 2017 for the development of an Optical CT Scanner and in 2019 for the development of an Optical tweezers set up, aiming at presenting basic phycics principles in Secondary Education. 

Awards/Prizes/Distinctions

  • 1st Prize Science on Stage Europe 2019
  • 1st Prize Science on Stage Greece 2018
  • 1st Prize Science on Stage Europe 2017
  • 1st Prize Science on Stage Greece 2016
Tomography in school – Optical CT Scanner with Lego and Arduino
Orfanakis Michalis
Lab Phone: (+30) 2810 39 1918
Fax: G060
Email: mylonakis@iesl.forth.gr
Full CV: Download

Michail (Mikis) Mylonakis completed his PhD at the Laboratory for Biophotonics and Molecular Imaging (LBMI), part of the Institute of Electronic Structure and Laser (IESL) at the Foundation for Research and Technology - Hellas (FORTH), in 2024. He was born in Chania in 1993 and pursued his undergraduate studies in Physics at the University of Crete (2011-2015), followed by a Master’s degree in Materials Science and Technology (2015-2018). His doctoral research focused on wavefront shaping for microscopic imaging of biological samples. Over the course of his studies, Mikis has worked on optical systems for imaging ultra-cold atoms and contributed to various research projects. He has been recognized with several awards, including the 1st Prize at Science on Stage Europe in 2019 for his innovative educational work in science, including an adaptive optics illumination device for in vivo imaging.

Education

  • 2024, Phd, Materials Science and Technology, University of Crete
  • 2018, MSc, Materials Science and Technology, University of Crete, Greece
  • 2015, Bsc, Department of Physics, University of Crete, Greece

Interests

  • Optical design
  • Bioimaging
  • Mechanical design
  • Wavefront shaping

Awards/Prizes/Distinctions

  • 1st Prize Science on Stage Europe 2019
  • 1st Prize Science on Stage Greece 2018

Other

AN ASSEMBLY OF OPTICAL ELEMENTS AND A METHOD FOR CONTROLLING LIGHT 

Ioannis Zacharakis, Michail(Mikis) Mylonakis, Evangelos Marakis, Athanasios Zacharopoulos & Emmanouil VergisEuropean Patent application no. 22164624.3

https://patents.google.com/patent/WO2023186345A1

Simple precision measurements of optical beam sizes
Mikis Mylonakis, Saurabh Pandey, Kostas G. Mavrakis, Giannis Drougakis, Georgios Vasilakis, Dimitris G. Papazoglou, and Wolf von Klitzing
OSA-AO, Volume:57, Issue:33, Page:9863-9867, Year:2018, DOI:https://doi.org/10.1364/AO.57.009863
Bimodal optical and optoacoustic multiview microscope in the frequency-domain
Mylonakis M., Tserevelakis G.J., Vlachos G., Fanouraki E., Pavlopoulos A., Pavlidis M., Zacharakis G.
Office Phone: (+30) 2810 39 1918
Lab Phone: (+30) 2810 39 1958
Fax: G060
Email: mavrakis@iesl.forth.gr
Full CV: Download

Dr. Konstantinos Mavrakis received his B.Sc. in Materials Science (2013), M.Sc. in Materials Science (2017), and Ph.D. in Biomedical Optical Imaging (2024) from the University of Crete, Greece. He conducted his Ph.D. research at the Department of Materials Science and Engineering (DMSE).

He worked at the Laboratory for Biophotonics and Molecular Imaging (LBMI) at IESL/FORTH on European projects, including "Dynamic" and "BioImaging-Gr." . Dr. Mavrakis has co-authored several peer-reviewed publications and presented at international conferences. He has also received a Fulbright scholarship and multiple awards, including the Best Speech Award at the European Molecular Imaging Meeting 2020.

Education

  • 2024, Phd, Materials Science and Technology, University of Crete
  • 2017, MSc, Materials Science and Technology, University of Crete
  • 2014, BSc, Materials Science and Technology, University of Crete

Interests

  • Photoacoustic microscopy
  • Second Harmonic Generation
  • Coherent Raman Scattering

Awards/Prizes/Distinctions

  • Fulbright graduate student grant
  • Soykoyli grant
Simple precision measurements of optical beam sizes
Mikis Mylonakis, Saurabh Pandey, Kostas G. Mavrakis, Giannis Drougakis, Georgios Vasilakis, Dimitris G. Papazoglou, and Wolf von Klitzing
OSA-AO, Volume:57, Issue:33, Page:9863-9867, Year:2018, DOI:https://doi.org/10.1364/AO.57.009863
Hybrid confocal fluorescence and photoacoustic microscopy for the label-free investigation of melanin accumulation in fish scales
George J Tserevelakis, Michalis Pavlidis, Athanasios Samaras, Georgios D Barmparis, Kostas G Mavrakis, Ioannis Draganidis, Athanasios Oikonomou, Eleftheria Fanouraki, Giorgos P Tsironis, Giannis Zacharakis
Hybrid confocal fluorescence and photoacoustic microscopy for the label-free investigation of melanin accumulation in fish scales
George J Tserevelakis, Michalis Pavlidis, Athanasios Samaras, Georgios D Barmparis, Kostas G Mavrakis, Ioannis Draganidis, Athanasios Oikonomou, Eleftheria Fanouraki, Giorgos P Tsironis, Giannis Zacharakis
Lab Phone: (+30) 2810 39 1558
Email: marilena@ics.forth.gr
Full CV: Download
Dr. Oraiopoulou Mariam Eleni

Dr. Mariam-Eleni Oraiopoulou  has been a Postdoctoral Researcher in the Computational Bio-Medicine Laboratory (CBML) at the Institute of Computer Science (ICS) of the Foundation for Research & Technology – Hellas (ICS-FORTH) in collaboration with the Laboratory for Biophotonics and Molecular Imaging (LBMI) at the Institute of Electronic Structure and Laser (IESL-FORTH) and the Gene Expression Laboratory, Institute of Molecular Biology and Biotechnology (IMBB-FORTH).  
She received her PhD in the field of (Computational) Neurosciences – NeuroOncology at the Faculty of Medicine, University of Crete, Greece and at the CBML-ICS-FORTH in 2018. She received her Diploma in Biological Applications and Technology in 2011 from the University of Ioannina, Greece with a Diploma Thesis regarding Metabolomics and Nuclear Magnetic Resonance in Human Subjects. She also holds an MSc in Brain and Mind Sciences since 2014 from the Faculty of Medicine, University of Crete with a Master Thesis regarding Magnetic Resonance Imaging (MRI) in Human Brain Cancer.  
Her main research interests are the Neurobiology of the Central Nervous System (CNS) and in particular, the pathophysiology of the human brain cancer in interplay with non-invasive imaging biomarkers and in silico tumor growth validation based on human, patient-derived, brain cancer models including both in vitro and in vivo preclinical studies.  

Education

  • 2018, PhD, Faculty of Medicine, University of Crete , Greece
  • 2014, MSc, Faculty of Medicine, University of Crete, Greece
  • 2011, BSc, Department of Biological Applications and Technology, University of Ioannina, Greece

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